Simula Cardiac Electro-Mechanics Solver

simcardems is a FEniCS-based cardiac electro-mechanics solver and is developed as a part of the SimCardio Test project. The solver depends on the mechanics solver pulse and electrophysiology solver cbcbeat.

Source code

The source code can be found on GitHub

Contents

Installation

• Installation
• Install with Docker
• Install with pip

Mathematical Theory

• Tissue level mechanics model
• Tissue level electrophysiology model
• Cellular model
• Electro-Mechanical coupling

Demos

• Simple demo
• initial conditions demo
• Release test
• Drug effects demo
• Left ventricular geometry
• Custom model (pure EP)
• Extracting currents
• Tracking Values
• Custom stimulus domain
• Niederer benchmark
• Command line interface
• Run using Docker
• Graphical user interface

Verification

• Benchmark
• Spatial convergence test
• Temporal convergence test

Postprocessing

• Data visualization

Community

• Contributing

Programmers reference

• API documentaion

License

simcardems is licensed under the GNU LGPL, version 2.1 or (at your option) any later version. simcardems is Copyright (2011-2022) by the authors and Simula Research Laboratory.

Authors

simcardems is developed at Simula Research Laboratory. The core developers are

• Henrik Finsberg (henriknf@simula.no)

• Ilsbeth van Herck (ilse@simula.no)

• Cécile Daversin-Catty (cecile@simula.no)